Gems
bio-graphics 1.4
Library for visualizing genomic regions
15,582 Downloads
bio-grid 0.3.3
A BioGem to submit jobs on a queue system
46,605 Downloads
bio-hello 0.0.0
Encode any message string into a DNA sequence
5,641 Downloads
bio-hmmer3_report 0.1.0
Enables programmatic parsing of HMMER version 3 reports
8,132 Downloads
bio-hmmer_model 0.0.2
Parse PFAM HMM definition files so that the models can be accessible programmatically
8,968 Downloads
bio-hydropathy 0.0.1
Hydropathy scale for BioRuby
5,272 Downloads
bio-img_metadata 0.0.1
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmat...
4,842 Downloads
bio-incanter 0.1.0
A Jruby wrapper to Incanter lib
5,164 Downloads
bioinform 0.3.1
A bunch of useful classes for bioinformatics
83,156 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
47,616 Downloads
bio-ipcress 0.1.0
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the ...
7,539 Downloads
bio-iqtree 0.1.2
Phylogenetic analysis using IQ-Tree via BioRuby
2,853 Downloads
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
18,954 Downloads
bio-jaspar 0.1.0
Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs mo...
3,577 Downloads
bio-kallisto 0.1.0
Basic wrapper for the Kallistio Mapper
3,654 Downloads
bio-kb-illumina 0.1.0
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...
10,172 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
23,811 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14,378 Downloads
bio-kseq 0.0.2
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
5,759 Downloads
biola_deploy 0.7.2
Designed to automate deployment of Rails applications using rake tasks
72,210 Downloads
biola_frontend_toolkit 0.6.4
this is a description
76,821 Downloads
biola_logs 0.3.0
Standardized, opinionated log formatting
16,116 Downloads
biola_wcms_components 0.25.4
Reusable UX components for use in or WCMS projects
104,186 Downloads
biola_web_services 1.1.3
Simple Ruby wrapper for Biola Web Services REST calls
29,187 Downloads
bio-lazyblastxml 0.4.0
This is very scrappy at the moment, and will need to be seriously cleaned up. It does w...
13,782 Downloads
bio-liftover 1.3.0
Simple, under development Ruby solution for UCSC LiftOver tool
13,425 Downloads
bio-location-rdfize 0.0.0
This is a BioRuby plugin providing FALDO location RDF output method for Bio::Location o...
3,944 Downloads
bio-locus 0.0.7
A tool for fast querying and filtering of genome locations in VCF and other formats
11,512 Downloads
bio-logger 1.0.1
Log4r wrapper for BioRuby
35,582 Downloads
bio-maf 1.0.1
Multiple Alignment Format parser for BioRuby.
52,210 Downloads