Gems
bio-gemma-wrapper 0.99.7
GEMMA wrapper adds LOCO and permutation support. Also runs in parallel and caches K bet...
21,468 Downloads
bio-genomic-interval 0.1.2
a BioRuby plugin: handling genomic intervals,such as "chr1:123-456", and overlap state ...
16,097 Downloads
bio-gfastqc 0.0.4
Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-)...
6,448 Downloads
bio-gff3 0.9.1
GFF3 (genome browser) information and digest mRNA and CDS sequences. Options for low me...
45,251 Downloads
bio-gff3-pltools 0.3.0
Ruby wrapper for the gff3-pltools.
12,951 Downloads
bio-gggenome 0.2.0
A Ruby client for GGGenome the Ultrafast sequence search
7,949 Downloads
bio-gngm 0.2.1
Identify causative mutations in a model genome from NGS reads using the NGM method.
13,276 Downloads
biographer 0.1.0
A gem that creates a personal static website for software developers that showcases the...
3,285 Downloads
bio-graphics 1.4
Library for visualizing genomic regions
15,645 Downloads
bio-grid 0.3.3
A BioGem to submit jobs on a queue system
46,842 Downloads
bio-hello 0.0.0
Encode any message string into a DNA sequence
5,673 Downloads
bio-hmmer3_report 0.1.0
Enables programmatic parsing of HMMER version 3 reports
8,181 Downloads
bio-hmmer_model 0.0.2
Parse PFAM HMM definition files so that the models can be accessible programmatically
9,021 Downloads
bio-hydropathy 0.0.1
Hydropathy scale for BioRuby
5,300 Downloads
bio-img_metadata 0.0.1
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmat...
4,871 Downloads
bio-incanter 0.1.0
A Jruby wrapper to Incanter lib
5,193 Downloads
bioinform 0.3.1
A bunch of useful classes for bioinformatics
83,591 Downloads
biointerchange 1.0.8
BioInterchange is a Ruby gem, command-line tool, web-service for turning heterogeneous ...
47,884 Downloads
bio-ipcress 0.1.0
a programmatic interface to the iPCRess in-silico PCR software. iPCRess is part of the ...
7,585 Downloads
bio-iqtree 0.1.2
Phylogenetic analysis using IQ-Tree via BioRuby
2,878 Downloads
bio-isoelectric_point 0.1.3
A bioruby plugin for calculating the isoelectric point of a protein
19,040 Downloads
bio-jaspar 0.1.0
Basic tools for parsing, searching, and comparing JASPAR motifs; Based on Bio.motifs mo...
3,605 Downloads
bio-kallisto 0.1.0
Basic wrapper for the Kallistio Mapper
3,682 Downloads
bio-kb-illumina 0.1.0
Provide access to the IlluminaHumanAnnotations. Database comes form Bioconductor's pack...
10,222 Downloads
bio-kmer_counter 0.1.2
A biogem for counting small kmers for fingerprinting nucleotide sequences. See README f...
23,957 Downloads
bio-krona 0.2.0
This biogem is built around Krona, a flashy way of representing hierarchical data.
14,458 Downloads
bio-kseq 0.0.2
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
5,978 Downloads
biola_deploy 0.7.2
Designed to automate deployment of Rails applications using rake tasks
72,577 Downloads
biola_frontend_toolkit 0.6.4
this is a description
77,270 Downloads
biola_logs 0.3.0
Standardized, opinionated log formatting
16,192 Downloads