Gems
bio-bigbio 0.1.6
Fasta reader, ORF emitter, sequence translation
26,652 Downloads
bio-bigwig 0.1.0
This is a Ruby binding for libBigWig (https://github.com/dpryan79/libBigWig), which pro...
4,627 Downloads
bio-biolinux 0.1.0
Meta package for BioLinux distribution: bio-core, bio-core-ext
5,741 Downloads
bio-biosql 0.0.0
Provides BioSQL support for BioRuby.
3,414 Downloads
bio-biostars-analytics 0.2.0
Ruby script for data-mining biostars.org using web-crawling techniques as well as utili...
10,887 Downloads
bio-blast_seq_extract 0.2.5
Extract the sequence of the subjects' region based on blast search.
5,429 Downloads
bio-blastxmlparser 2.0.4
Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster th...
54,545 Downloads
bio-blast-xmlparser 0.0.0
BioRuby BLAST XMLParser plugin: a plugin of BioRuby BLAST XML result parser by using th...
3,335 Downloads
bio-blat-tools 0.1.0
Tools to manipulate blat files from the command line. Uses the Bio::Blat object from Bi...
4,257 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
14,984 Downloads
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,298 Downloads
biocgem 0.0.3
biocgem command line tools
4,604 Downloads
bio-cgranges 0.0.4
Genomic interval overlap queries
4,290 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,613 Downloads
bio-cigar 0.1.0
A parser for CIGAR format alignments.
8,019 Downloads
bio-cnls_screenscraper 0.3.0
Programmatic interface to the cNLS nuclear localisation signal prediction software
9,898 Downloads
bio-commandeer 0.4.0
A dead simple method of running shell commands from within Ruby, by applying opinion
25,476 Downloads
bio-conduit 1.0.0
A pipeline creator for bioruby
3,929 Downloads
bio-core 0.0.1
Bioruby core plugins
10,268 Downloads
bio-core-ext 0.0.1
BioRuby plugins with dependecies from external library or tools
5,766 Downloads
bio-data-restriction_enzyme 1.109.0
Restriction Enzyme Dataset from REBASE in yaml form
5,683 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26,609 Downloads
bio-dbsnp 0.1.1
decoding the dbSNP bitfield containg detaild information
5,673 Downloads
biodiversity 6.0.1
Parsing tool for biodiversity informatics
250,502 Downloads
biodiversity19 3.1.7
Tools for biodiversity informatics
210,659 Downloads
BioDSL 1.0.2
BioDSL is a Bioinformatics Domain Specific Language.
9,631 Downloads
bio-emboss_six_frame_nucleotide_sequences 0.1.0
a method to get the nucleotide sequence of translations done by the EMBOSS bioinformati...
5,952 Downloads
bio-ensembl 1.1.0
This API provides a complete set of methods and classes to access the Ensembl database ...
5,733 Downloads
bio-ensembl-rest 0.2.0
A Ruby library for the RESTful Ensembl API.
8,361 Downloads
bio-executables 1.0.0
BioRuby executables is a collection of miscellaneous utilities for bioinformatics that ...
6,468 Downloads