Gems
bio-blast-xmlparser 0.0.0
BioRuby BLAST XMLParser plugin: a plugin of BioRuby BLAST XML result parser by using th...
3,443 Downloads
bio-blat-tools 0.1.0
Tools to manipulate blat files from the command line. Uses the Bio::Blat object from Bi...
4,314 Downloads
bio-bwa 0.2.2
Ruby binding for BWA mapping software, built using Ruby-FFI library
15,165 Downloads
bio-cd-hit-report 0.1.0
A Ruby library for reading CD-HIT cluster reports
17,456 Downloads
biocgem 0.0.3
biocgem command line tools
4,770 Downloads
bio-cgranges 0.0.4
Genomic interval overlap queries
4,579 Downloads
bio-chembl 0.1.3
BioRuby plugin for ChEMBL REST API Client, Parser and Container classes
13,873 Downloads
bio-cigar 0.1.0
A parser for CIGAR format alignments.
8,192 Downloads
bio-cnls_screenscraper 0.3.0
Programmatic interface to the cNLS nuclear localisation signal prediction software
9,985 Downloads
bio-commandeer 0.4.0
A dead simple method of running shell commands from within Ruby, by applying opinion
26,023 Downloads
bio-conduit 1.0.0
A pipeline creator for bioruby
4,003 Downloads
bio-core 0.0.1
Bioruby core plugins
10,381 Downloads
bio-core-ext 0.0.1
BioRuby plugins with dependecies from external library or tools
5,833 Downloads
bio-data-restriction_enzyme 1.109.0
Restriction Enzyme Dataset from REBASE in yaml form
5,742 Downloads
bio-dbla-classifier 0.7.1
Methods to classify and manipulate PfEMP1 DBL-alpha sequence tags
26,839 Downloads
bio-dbsnp 0.1.1
decoding the dbSNP bitfield containg detaild information
5,738 Downloads
biodiversity 6.0.1
Parsing tool for biodiversity informatics
255,952 Downloads
biodiversity19 3.1.7
Tools for biodiversity informatics
212,589 Downloads
BioDSL 1.0.2
BioDSL is a Bioinformatics Domain Specific Language.
9,894 Downloads
bio-emboss_six_frame_nucleotide_sequences 0.1.0
a method to get the nucleotide sequence of translations done by the EMBOSS bioinformati...
6,004 Downloads
bio-ensembl 1.1.0
This API provides a complete set of methods and classes to access the Ensembl database ...
5,807 Downloads
bio-ensembl-rest 0.2.0
A Ruby library for the RESTful Ensembl API.
8,452 Downloads
bio-executables 1.0.0
BioRuby executables is a collection of miscellaneous utilities for bioinformatics that ...
6,651 Downloads
bio-exominer 0.0.3
Parse publications for gene names in a fuzzy fashion
4,663 Downloads
bio-exportpred 0.0.1
Wrapper around the ExportPred algorithm for predicting P. falciparum exported proteins....
5,926 Downloads
bio-express_beta_diversity 0.1.0
Interface for express beta diversity file formats
8,140 Downloads
bio-faidx 0.0.1
ools to work with fasta files, indexed with samtools. The initial releases depend on bi...
4,429 Downloads
bio-fasta_retrieve 0.0.7
Gem that helps to retrieve DNA sequence from UCSC
22,036 Downloads
bio-faster 0.4.5
A fast parser for FastQ files
31,993 Downloads
bio-fastqc 0.10.8
ruby parser for FastQC, a quality control software for high-throughput sequencing data.
65,104 Downloads