Gems
bioportal 2.2
Supports linking of Models within a RoR application to a Concept and Ontology within th...
14,395 Downloads
bio-primer3 0.0.1.pre
Primer3-related Ruby code - wrappers, Boulder IO, etc.
2,516 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,443 Downloads
biopsy 0.3.0
framework for optimising any computational pipeline or program
29,799 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
32,032 Downloads
bio-qtlHD 0.0.1.alpha.1
Ruby tools and scripts for QTL mapping, part of the qtlHD project
2,657 Downloads
bio-raxml 0.1.0
Just a test
4,589 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
12,263 Downloads
bio-repeatmasker 0.0.3
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
7,498 Downloads
bio-restriction_enzyme 1.0.0
Digests DNA based on restriction enzyme cut patterns
5,659 Downloads
bio-rocker 1.5.2
Detecting and quantifying functional genes in short-read metagenomic datasets
55,306 Downloads
bioruby-bio 1.3.1.5000
BioRuby is a library for bioinformatics (biology + information science).
19,456 Downloads
bioruby-phyloxml 1.0.0
Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...
4,049 Downloads
bios 0.0.1
Coming soon!
6,309 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21,141 Downloads
bio-sam-mutation 0.4.1
Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...
3,333 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
121,859 Downloads
bio-samtools-server 0.1.2
A minimal web service on the top of sinatra to query bam files
7,284 Downloads
bio-samtools-wrapper 2.7.0
Wrapper of samtools for ruby. This project was born from the need to add support of...
200 Downloads
bioseqalign 0.0.4
A simple gem to perform fast pairwise sequence alignment using seqan
12,143 Downloads
bio-sge 0.0.0
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
5,760 Downloads
bio-shell 1.0.1
BioRuby Shell is a command line interface on BioRuby open source bioinformatics library...
7,564 Downloads
bioshogi 0.0.15
Shogi library
3,568 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
24,766 Downloads
bio-sparql-client 0.0.1
A ruby wrapper for bio SPARQL service
3,831 Downloads
biosphere 0.2.19
Terraform's HCL lacks quite many programming features like iterators, true variables, a...
87,829 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11,726 Downloads
biostars-api 0.1.4
Gem wrapping biostars.org public API
11,886 Downloads
bio-statsample-glm 0.1.1
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...
7,829 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14,702 Downloads