Gems
bio-repeatmasker 0.0.3
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
7,453 Downloads
bio-restriction_enzyme 1.0.0
Digests DNA based on restriction enzyme cut patterns
5,630 Downloads
bio-rocker 1.5.2
Detecting and quantifying functional genes in short-read metagenomic datasets
54,903 Downloads
bioruby-bio 1.3.1.5000
BioRuby is a library for bioinformatics (biology + information science).
19,334 Downloads
bioruby-phyloxml 1.0.0
Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...
4,019 Downloads
bios 0.0.1
Coming soon!
6,283 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21,038 Downloads
bio-sam-mutation 0.4.1
Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...
3,304 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
121,235 Downloads
bio-samtools-server 0.1.2
A minimal web service on the top of sinatra to query bam files
7,238 Downloads
bio-samtools-wrapper 2.7.0
Wrapper of samtools for ruby. This project was born from the need to add support of...
155 Downloads
bioseqalign 0.0.4
A simple gem to perform fast pairwise sequence alignment using seqan
12,058 Downloads
bio-sge 0.0.0
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
5,731 Downloads
bio-shell 1.0.1
BioRuby Shell is a command line interface on BioRuby open source bioinformatics library...
7,439 Downloads
bioshogi 0.0.13
Shogi library
2,959 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
24,648 Downloads
bio-sparql-client 0.0.1
A ruby wrapper for bio SPARQL service
3,799 Downloads
biosphere 0.2.19
Terraform's HCL lacks quite many programming features like iterators, true variables, a...
87,021 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
11,634 Downloads
biostars-api 0.1.4
Gem wrapping biostars.org public API
11,805 Downloads
bio-statsample-glm 0.1.1
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...
7,779 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
14,609 Downloads
bio-stockholm 0.0.1
Parses stockholm sequence alignment format
4,720 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
60,243 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
11,814 Downloads
bio-tabix 1.0.1
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
15,952 Downloads
bio-table 1.0.0
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
35,114 Downloads
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
25,655 Downloads
bio-twobit 0.2.2
This is a Ruby binding for lib2bit(https://github.com/dpryan79/lib2bit), which provides...
6,672 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
74,470 Downloads