Gems
bio-old-biofetch-emulator 1.0.0
Emulator that emulates Bio::Fetch object in BioRuby as if old BioRuby BioFetch server w...
8,632 Downloads
bio-pangenome 0.1.3
Tools to find similarity between pangenomes.
6,746 Downloads
bio-phyloxml 0.9.0
Provides PhyloXML support for BioRuby.
5,639 Downloads
bio-phyta 0.9.4
Pipeline to remove contaminations from EST libraries
24,115 Downloads
bio-picard 1.131.5
API of Picard tool
4,157 Downloads
bio-pileup_iterator 0.0.4
Iterate through a samtools pileup file
14,525 Downloads
bio-pipengine 0.9.7
A pipeline manager
30,986 Downloads
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,401 Downloads
bio-plates 0.2.0
Methods for handling multiwell plate annotations, includes ranges and quadrants
3,680 Downloads
bio-polymarker 1.3.3
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
988 Downloads
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
28,808 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
124,391 Downloads
bioportal 2.2
Supports linking of Models within a RoR application to a Concept and Ontology within th...
14,994 Downloads
bio-primer3 0.0.1.pre
Primer3-related Ruby code - wrappers, Boulder IO, etc.
2,770 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,884 Downloads
biopsy 0.3.0
framework for optimising any computational pipeline or program
31,472 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
34,030 Downloads
bio-qtlHD 0.0.1.alpha.1
Ruby tools and scripts for QTL mapping, part of the qtlHD project
2,981 Downloads
bio-raxml 0.1.0
Just a test
4,895 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,174 Downloads
bio-repeatmasker 0.0.3
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
7,873 Downloads
bio-restriction_enzyme 1.0.0
Digests DNA based on restriction enzyme cut patterns
5,931 Downloads
bio-rocker 1.5.2
Detecting and quantifying functional genes in short-read metagenomic datasets
57,718 Downloads
bioruby-bio 1.3.1.5000
BioRuby is a library for bioinformatics (biology + information science).
20,162 Downloads
bioruby-mcp-server 0.1.0
An MCP server that provides access to BioRuby KEGG functionality, allowing AI assistant...
451 Downloads
bioruby-phyloxml 1.0.0
Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...
4,422 Downloads
bios 0.0.1
Coming soon!
6,664 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
21,890 Downloads
bio-sam-mutation 0.4.1
Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...
3,653 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
128,146 Downloads