Gems
bio-samtools-server 0.1.2
A minimal web service on the top of sinatra to query bam files
7,781 Downloads
bio-samtools-wrapper 2.7.0
Wrapper of samtools for ruby. This project was born from the need to add support of...
514 Downloads
bioseqalign 0.0.4
A simple gem to perform fast pairwise sequence alignment using seqan
12,833 Downloads
bio-sge 0.0.0
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
6,123 Downloads
bio-shell 1.0.1
BioRuby Shell is a command line interface on BioRuby open source bioinformatics library...
8,390 Downloads
bioshogi 0.0.18
Shogi library
7,168 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
25,905 Downloads
bio-sparql-client 0.0.1
A ruby wrapper for bio SPARQL service
4,179 Downloads
biosphere 0.2.19
Terraform's HCL lacks quite many programming features like iterators, true variables, a...
94,614 Downloads
bio-sra 0.3.1
A Sequence Read Archive (SRA) download script and Ruby interface to the SRAdb (SRA meta...
12,434 Downloads
biostars-api 0.1.4
Gem wrapping biostars.org public API
12,520 Downloads
bio-statsample-glm 0.1.1
Statsample-GLM is an extension to Statsample, an advance statistics suite in Ruby. This...
8,404 Downloads
bio-statsample-timeseries 0.2.1
Statsample-timeseries is an extension to Statsample. It incorporates helpful timeseries...
15,581 Downloads
bio-stockholm 0.0.1
Parses stockholm sequence alignment format
5,255 Downloads
bio-svgenes 0.4.1
This bio-gem facilitates the creation of pretty, publication quality SVG images from fe...
63,362 Downloads
bio-synreport 0.1.2
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alt...
12,549 Downloads
bio-tabix 1.0.1
Tabix file indexing routines from the samtools package http://samtools.sourceforge.net/
16,557 Downloads
bio-table 1.0.0
Functions and tools for tranforming and changing tab delimited and comma separated tabl...
36,809 Downloads
bio-tm_hmm 0.2.4
A bioruby plugin for interaction with the transmembrane predictor TMHMM
27,086 Downloads
bio-twobit 0.2.4
This is a Ruby binding for lib2bit(https://github.com/dpryan79/lib2bit), which provides...
9,449 Downloads
bio-ucsc-api 0.6.5
Ruby UCSC API: accessing the UCSC Genome Database using Ruby
79,006 Downloads
bio-ucsc-util 0.1.2
Ruby FFI binding of the ucsc kent src. Implemented utilities include: bigWigInfo, bigWi...
13,104 Downloads
bio-unichem 0.3.0
BioRuby plugin for UniChem REST Web service
12,760 Downloads
bio-vcf 0.9.5
Smart lazy multi-threaded parser for VCF format with useful filtering and output rewrit...
44,355 Downloads
bio-velvet 0.6.0
Parser to work with some file formats used in the velvet DNA assembler
27,510 Downloads
bio-velvet_underground 0.3.1
Bindings to some internals of the velvet assembler.
19,668 Downloads
biovision 0.12.211128.0
Better version of biovision-base for rails 6.
11,317 Downloads
biovision-base 0.41.190905.0
Base components for Biovision applications. Models, Controllers, locales, some JS and SCSS
40,989 Downloads
biovision-comment 0.12.200627.0
Commenting for biovision-based applications
11,233 Downloads
biovision-courses 0.0.180222
Managing courses and study for biovision-based applications.
4,746 Downloads