RubyGems Navigation menu

Gems

bio-plasmoap 0.1.1

The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...

16,654 Downloads

bio-plates 0.2.0

Methods for handling multiwell plate annotations, includes ranges and quadrants

3,747 Downloads

bio-polymarker 1.3.3

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

1,187 Downloads

bio-polymarker_db_batch 0.5.1

Server for polymarker. To be used with cron

29,172 Downloads

bio-polyploid-tools 1.2.1

Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat

126,286 Downloads

bioportal 2.2

Supports linking of Models within a RoR application to a Concept and Ontology within th...

15,121 Downloads

bio-primer3 0.0.1.pre

Primer3-related Ruby code - wrappers, Boulder IO, etc.

2,838 Downloads

bio-protparam 0.2.0

Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...

10,965 Downloads

biopsy 0.3.0

framework for optimising any computational pipeline or program

31,923 Downloads

bio-publisci 0.1.0

A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...

34,589 Downloads

bio-qtlHD 0.0.1.alpha.1

Ruby tools and scripts for QTL mapping, part of the qtlHD project

3,092 Downloads

bio-raxml 0.1.0

Just a test

4,948 Downloads

bio-rdf 0.0.2

Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...

13,428 Downloads

bio-repeatmasker 0.0.3

A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath

7,920 Downloads

bio-restriction_enzyme 1.0.0

Digests DNA based on restriction enzyme cut patterns

5,978 Downloads

bio-rocker 1.5.2

Detecting and quantifying functional genes in short-read metagenomic datasets

58,294 Downloads

bioruby-bio 1.3.1.5000

BioRuby is a library for bioinformatics (biology + information science).

20,252 Downloads

bioruby-mcp-server 0.1.0

An MCP server that provides access to BioRuby KEGG functionality, allowing AI assistant...

514 Downloads

bioruby-phyloxml 1.0.0

Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...

4,521 Downloads

bios 0.0.1

Coming soon!

6,754 Downloads

bio-sambamba 0.0.5

New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...

22,000 Downloads

bio-sam-mutation 0.4.1

Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...

3,712 Downloads

bio-samtools 2.6.2

Binder of samtools for ruby, on the top of FFI. This project was born from the need...

129,611 Downloads

bio-samtools-server 0.1.2

A minimal web service on the top of sinatra to query bam files

7,873 Downloads

bio-samtools-wrapper 2.7.0

Wrapper of samtools for ruby. This project was born from the need to add support of...

585 Downloads

bioseqalign 0.0.4

A simple gem to perform fast pairwise sequence alignment using seqan

12,921 Downloads

bio-sge 0.0.0

Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...

6,194 Downloads

bio-shell 1.0.1

BioRuby Shell is a command line interface on BioRuby open source bioinformatics library...

8,609 Downloads

bioshogi 0.0.19

Shogi library

8,186 Downloads

bio-signalp 0.3.1

A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...

26,233 Downloads