Gems
bio-plasmoap 0.1.1
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptid...
16,654 Downloads
bio-plates 0.2.0
Methods for handling multiwell plate annotations, includes ranges and quadrants
3,747 Downloads
bio-polymarker 1.3.3
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
1,187 Downloads
bio-polymarker_db_batch 0.5.1
Server for polymarker. To be used with cron
29,172 Downloads
bio-polyploid-tools 1.2.1
Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat
126,286 Downloads
bioportal 2.2
Supports linking of Models within a RoR application to a Concept and Ontology within th...
15,121 Downloads
bio-primer3 0.0.1.pre
Primer3-related Ruby code - wrappers, Boulder IO, etc.
2,838 Downloads
bio-protparam 0.2.0
Bio::Protparam has same interface and function as Bio::Tools::Protparam class of BioPer...
10,965 Downloads
biopsy 0.3.0
framework for optimising any computational pipeline or program
31,923 Downloads
bio-publisci 0.1.0
A toolkit for publishing scientific results and datasets using RDF, OWL, and related te...
34,589 Downloads
bio-qtlHD 0.0.1.alpha.1
Ruby tools and scripts for QTL mapping, part of the qtlHD project
3,092 Downloads
bio-raxml 0.1.0
Just a test
4,948 Downloads
bio-rdf 0.0.2
Store relationships in a triple-store, such as gene enrichment and QTL, and use this in...
13,428 Downloads
bio-repeatmasker 0.0.3
A simple gem to parse, filter/search raw Repeat Masker output file from GoldenPath
7,920 Downloads
bio-restriction_enzyme 1.0.0
Digests DNA based on restriction enzyme cut patterns
5,978 Downloads
bio-rocker 1.5.2
Detecting and quantifying functional genes in short-read metagenomic datasets
58,294 Downloads
bioruby-bio 1.3.1.5000
BioRuby is a library for bioinformatics (biology + information science).
20,252 Downloads
bioruby-mcp-server 0.1.0
An MCP server that provides access to BioRuby KEGG functionality, allowing AI assistant...
514 Downloads
bioruby-phyloxml 1.0.0
Provides PhyloXML support for BioRuby. This bioruby-phyloxml gem replaces old unmaintai...
4,521 Downloads
bios 0.0.1
Coming soon!
6,754 Downloads
bio-sambamba 0.0.5
New Sambamba library comes with a command-line tool for working with SAM/BAM files. Thi...
22,000 Downloads
bio-sam-mutation 0.4.1
Simple classes for parsing SAM, CIGAR and MD:Z strings, including slices. Methods for c...
3,712 Downloads
bio-samtools 2.6.2
Binder of samtools for ruby, on the top of FFI. This project was born from the need...
129,611 Downloads
bio-samtools-server 0.1.2
A minimal web service on the top of sinatra to query bam files
7,873 Downloads
bio-samtools-wrapper 2.7.0
Wrapper of samtools for ruby. This project was born from the need to add support of...
585 Downloads
bioseqalign 0.0.4
A simple gem to perform fast pairwise sequence alignment using seqan
12,921 Downloads
bio-sge 0.0.0
Entries in a flatfile will be parased by the BioRuby's Bio::FlatFile.auto module. These...
6,194 Downloads
bio-shell 1.0.1
BioRuby Shell is a command line interface on BioRuby open source bioinformatics library...
8,609 Downloads
bioshogi 0.0.19
Shogi library
8,186 Downloads
bio-signalp 0.3.1
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, ...
26,233 Downloads